Soft82.com » Windows » Design & Photo » 3D Modeling & CAD » BottleSim 2.6

BottleSim Description

A computer simulation program for simulating the process of population bottlenecks.

The major novelties of the program include:

1. implementation of an overlapping-generation model
2. ability to simulate a wide range of scenarios regarding changes in population sizes
3. fexible settings of reproductive systems

Modules included in this version:

1. Diploid singlelocus with constant population size
2. Diploid singlelocus with variable population size
3. Diploid multilocus with constant population size
4. Diploid multilocus with variable population size

An option of generating raw genotypic data output is also available. The raw genotypic data output file contains the genotypic data from the last year of each iteration. The genotypic data output is in GENEPOP (Raymond and Rousset 1995) format. This feature allows users to perform poer analysis of statistical genetic tests.

The degree of generation overlap indicates the percentage of individuals that being assigned a random age value with the longevity limit. The age of individuals that are not assigned randomly is set to zero in year0.

The operation is self-explanatory, details of the algorithm are provided in Kuo and Janzen (2003).

BottleSim Limitations

The simulation process of this program is only limited by the amount of memory (RAM) available. (Mac OS 9 users: use command+I to change the amount of memory assigned to the program.) Other limitations regarding input/output filenames and input data: * Max. length of input and output filenames = 20 (characters) * Max. length of locus name = 10 (characters) * Max. length of individual's ID = 10 (characters)

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