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DEEP Description

Differential Expression Effector Prediction

DEEP is a tool that takes your data on differential gene expression (i.e. SAGE or microarray data) and predicts additional molecules which may be of importance in either of the two tissues (or conditions or time points...) under examination. It does so by combining your data with information on signaling networks stored in the TRANSPATH database (BIOBASE GmbH, Wolfenbüttel).

DEEP consists of a core server module and a JSP-based web interface, both running here in Göttingen. Additionally, you can download and install a Java client for DEEP on your local computer. Since the local client allows for much more interactivity when inspecting the calculation results (e.g. zooming and panning), its use is strongly encouraged.

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DEEP User Reviews

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