Soft82.com » Windows » Home & Education » Science » seqMINER 1.0

seqMINER Description

A genome wide mapping data interpretation platform

Here, we present seqMINER, an integrated user friendly platform that allows addressing central questions in the ChIP-seq analysis workflow. The design of seqMINER was made in order to make it as easy as possible for an investigator to reach high level of interpretation on his dataset to answer its biological question at best.

The purpose of seqMINER is to allow qualitative and quantitative comparisons between a reference set of genomic positions and multiple ChIP-seq datasets.

Different analysis modules have been implemented to allow users to dig out full characteristics of a particular features genome wide. Starting from a set of reference coordinates that can be a list of ChIP-seq enrichment clusters (peaks) for a particular target (i.e. a transcription factor), seqMINER proposes two complementary methods to analyse the signal enrichment status in multiple other tracks:

i) a qualitative method that computes a density array over a defined window around the reference coordinate.
ii) a quantitative method that computes enrichment value over a defined widow around the reference coordinate.

seqMINER Download Button For Your Site

If you want to place a Download Button for seqMINER on your website just insert the following code:

If you want a Link to this page you can use one of the logos bellow:

seqMINER User Reviews

New Science Software

ICAP/4Windows May 28, 2012 Powerful Analog & Mixed-Signal Solution Made Easy				EagleList May 28, 2012 View the components from an Eagle library file.
Atmel Studio May 25, 2012 The integrated development environment (IDE) for developing and debugging Atmel ARM				Micro-Cap May 24, 2012 An integrated schematic editor and mixed analog/digital simulator that provides an interactive
Machining Simulation May 24, 2012 Simulates CNC machines and system panel on computer				CIF2Cell May 24, 2012 A tool to generate the geometrical setup for various electronic structure codes
Breaktru Percent May 24, 2012 Calculate the percentage, tip and discount calculator				Multiwfn May 24, 2012 A Multifunctional Wavefunction Analyzer
ProCalc Portable May 24, 2012 ProCalc serves as a replacement for the standard Windows calculator				ProCalc May 24, 2012 ProCalc serves as a replacement for the standard Windows calculator
AVR delay loop generator May 24, 2012 A delay loops calculator				StatMat May 22, 2012 A mature PC based statistical analysis software package designed primarily for engineering
Poser Pro May 21, 2012 Add pre-rigged and fully textured 3D characters to your projects				B2 Spice A/D May 21, 2012 Create electrical circuit designs and perform simulations
Stellarium May 21, 2012 Stellarium is planetarium software that shows exactly what you see when you look up at the stars				AIM-Spice Student May 21, 2012 A general purpose analog simulator which contains models for most circuit elements
sRNA Workbench May 21, 2012 A new simple to use, downloadable sRNA software				GlycoWorkbench May 21, 2012 Semi-Automatic Interpretation and Annotation of Mass Spectra of Glycans
CReST May 21, 2012 CReST: The Cloud Research Simulation Toolkit				VBTheory Calculator May 21, 2012 Math calculations made easy

Last 7 Days Most Downloaded Science Products

Google Earth 231 downloads Google Earth allows you to point and zoom to anyplace on the planet that you want to explore				Stratego 143 downloads Stratego logic game.
Stellarium 124 downloads Stellarium is planetarium software that shows exactly what you see when you look up at the stars				PCB Wizard Standard Editions 94 downloads A powerful package for designing single-sided and double-sided printed circuit boards
VirtualBreadboard 92 downloads A simulation and development environment for embedded applications that use microcontrollers				Logger Pro 74 downloads Make data collection as simple as measure, analyze, and learn
Mobile Atlas Creator (formerly TrekBuddy Atlas Creator) 65 downloads TrekBuddy Atlas Creator is an program which creates offline atlases for the cell phones				GeoGebra 51 downloads Free mathematics software for learning and teaching
NASA World Wind 35 downloads Zoom from satellite altitude into any place on Earth				SolidWorks Explorer 29 downloads The only CAD file manager that’s as intuitive as Windows® Explorer

All Time Most Downloaded Science Products

Google Earth 234,747 downloads Google Earth allows you to point and zoom to anyplace on the planet that you want to explore				Stratego 59,758 downloads Stratego logic game.
Stellarium 40,161 downloads Stellarium is planetarium software that shows exactly what you see when you look up at the stars				PCB Wizard Standard Editions 4,049 downloads A powerful package for designing single-sided and double-sided printed circuit boards
VirtualBreadboard 6,346 downloads A simulation and development environment for embedded applications that use microcontrollers				Logger Pro 15,074 downloads Make data collection as simple as measure, analyze, and learn
Mobile Atlas Creator (formerly TrekBuddy Atlas Creator) 17,288 downloads TrekBuddy Atlas Creator is an program which creates offline atlases for the cell phones				GeoGebra 6,039 downloads Free mathematics software for learning and teaching
NASA World Wind 11,177 downloads Zoom from satellite altitude into any place on Earth				SolidWorks Explorer 6,397 downloads The only CAD file manager that’s as intuitive as Windows® Explorer