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476 downloads
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Entrainer is a Java program (JRE 1.5+ required, available from http://java.sun.com/javase/downloads/index.jsp) which creates binaural beat frequencies with light and animations for the purpose of...[more] |
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207 downloads
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It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, biochemistry, or related areas.
Features
*...[more] |
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138 downloads
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Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short...[more] |
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123 downloads
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PepT-IDE is a protein analysis tool that is used for multiple sequence alignment, 3D visualization and displaying protein contact maps for protein sequences and structures. It also has feedback...[more] |
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101 downloads
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Software suite for cell modelling...[more] |
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108 downloads
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Software suite for cell modelling...[more] |
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149 downloads
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This is a software suite used for cell modeling....[more] |
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107 downloads
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USeq is a collection of software tools for for both low and high level analysis of next generation, ultra high throughput signature sequencing data from the Solexa, SOLiD, and 454 platforms. Initial...[more] |
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63 downloads
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Calculate within- and between-groups correlation....[more] |
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128 downloads
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As the amount of data available on biological systems increases, so does the need for computing tools supporting their analysis.
In particular, by enabling the interactive exploration on various...[more] |
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132 downloads
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Clear separation of the several concepts of the algorithm, e.g. Gene, Chromosome, Genotype, Phenotype, Population and Fitness Function. The fitness calculation is parallelized....[more] |
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308 downloads
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SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. SAM aims to be a format that:
* Is flexible enough to store all the alignment...[more] |
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362 downloads
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Java TreeView renders gene expression data into several interactive views. The main treeview application considers these views interchangeable, and it is possible to define additional views. This...[more] |
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163 downloads
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Neuroshare is created to support the collaborative development of open library and data file format specifications for neurophysiology and distribute open-source data handling software tools for...[more] |
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91 downloads
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LaJolla is a peer reviewed algorithm for the 3D alignment of RNA and protein structures.
There are excellent algorithms known for structural protein / RNA alignment, but LaJolla is different...[more] |
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124 downloads
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A software for automatic peak selection and scoring of AFLP data tables ....[more] |
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116 downloads
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Flow Investigation using N-Dimensions (FIND) is a program designed for analysis and visualization of Flow Cytometry data. FIND focuses specifically on automated population discovery (clustering)...[more] |
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87 downloads
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Bubble Pond is a simple artificial life program that simulates bubble organisms that bounce around on the surface of a pond, eating and digesting different types of food, and reproducing both...[more] |
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175 downloads
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PAICE is a rapid pathway-visualization tool for Illumina Solexa and Affymetrix datasets, taking into account duplicate gene copies and conditions. PAICE is designed to rapidly visualize such datasets...[more] |
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86 downloads
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The C++ library for bioinformatics and artificial intelligence. Basic abstractions (like attribute, domain, state, etc.), DNA primitives (Nucleotide, Chain, EnergyNucleo, SecStruct, FoldedChain,...[more] |
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82 downloads
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Easy to use collection of classes specially designed for biological and bioinformatical topics....[more] |
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199 downloads
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The objective of this project is to make available an open-source version of our Multifactor Dimensionality Reduction (MDR) software. MDR is a nonparametric alternative to logistic regression for...[more] |
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77 downloads
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A map/reduce based application for mapping short reads generated by the next-generation sequencing machines....[more] |
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143 downloads
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It is designed to require minimum effort to use, but is also designed to be highly modular. JGAP features grid functionality and a lot of examples. Many unit tests included....[more] |
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177 downloads
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A tool for extracting and preprocessing spectral count data for label-free quantitative proteomic analysis. This program is designed to be used with the Trans-Proteomic Pipeline (TPP)....[more] |
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